Package: CopulaCenR 1.2.3

CopulaCenR: Copula-Based Regression Models for Multivariate Censored Data

Copula-based regression models for multivariate censored data, including bivariate right-censored data, bivariate interval-censored data, and right/interval-censored semi-competing risks data. Currently supports Clayton, Gumbel, Frank, Joe, AMH and Copula2 copula models. For marginal models, it supports parametric (Weibull, Loglogistic, Gompertz) and semiparametric (Cox and transformation) models. Includes methods for convenient prediction and plotting. Also provides a bivariate time-to-event simulation function and an information ratio-based goodness-of-fit test for copula. Method details can be found in Sun et.al (2019) Lifetime Data Analysis, Sun et.al (2021) Biostatistics, Sun et.al (2022) Statistical Methods in Medical Research, Sun et.al (2022) Biometrics, and Sun et al. (2023+) JRSSC.

Authors:Tao Sun, Ying Ding

CopulaCenR_1.2.3.tar.gz
CopulaCenR_1.2.3.zip(r-4.5)CopulaCenR_1.2.3.zip(r-4.4)CopulaCenR_1.2.3.zip(r-4.3)
CopulaCenR_1.2.3.tgz(r-4.4-any)CopulaCenR_1.2.3.tgz(r-4.3-any)
CopulaCenR_1.2.3.tar.gz(r-4.5-noble)CopulaCenR_1.2.3.tar.gz(r-4.4-noble)
CopulaCenR_1.2.3.tgz(r-4.4-emscripten)CopulaCenR_1.2.3.tgz(r-4.3-emscripten)
CopulaCenR.pdf |CopulaCenR.html✨
CopulaCenR/json (API)

# Install 'CopulaCenR' in R:

install.packages('CopulaCenR', repos = c('https://suntaojj.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

ACTG181 - ACTG181
AREDS - AREDS
DRS - DRS
Kidney - Kidney
data_scmprisk - Data_scmprisk
data_sim_RC - Data_sim_RC
data_sim_ic - Data_sim_ic
data_sim_multi_rec - Data_sim_multi_rec
data_sim_rec - Data_sim_rec
data_sim_scmprisk_vs - Data_sim_scmprisk_vs

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

11 exports 0.09 score 140 dependencies 26 scripts 348 downloads

Last updated 12 months agofrom:cafbbacc14. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 18 2024
R-4.5-win	OK	Sep 18 2024
R-4.5-linux	OK	Sep 18 2024
R-4.4-win	OK	Sep 18 2024
R-4.4-mac	OK	Sep 18 2024
R-4.3-win	OK	Sep 18 2024
R-4.3-mac	OK	Sep 18 2024

Exports:data_sim_copula ic_par_copula ic_scmprisk_spTran_copula ic_spTran_copula IRsurv lrt_copula rc_par_copula rc_scmprisk_sp_copula_pen rc_spCox_copula score_copula tau_copula

Dependencies:ADGofTest askpass assertthat base64enc bbmle bdsmatrix BH boot bslib cachem caret class cli clock coda codetools colorspace copBasic copula corpcor cpp11 crosstalk curl data.table deSolve diagram digest dplyr e1071 evaluate fansi farver fastGHQuad fastmap flexsurv fontawesome foreach fs future future.apply generics ggplot2 globals glue goftest gower gsl gtable hardhat highr htmltools htmlwidgets httr icenReg ipred isoband iterators jquerylib jsonlite KernSmooth knitr labeling later lattice lava lazyeval lifecycle listenv lmomco Lmoments lubridate magrittr MASS Matrix memoise mgcv mime MLEcens ModelMetrics mstate muhaz munsell mvtnorm nlme nnet numDeriv openssl parallelly pcaPP pillar pkgconfig plotly plyr pracma pROC prodlim progressr promises proxy pspline purrr quadprog R6 randtoolbox rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen recipes reshape2 rlang rmarkdown rngWELL rpart rstpm2 sass scales shape SQUAREM stabledist statmod stringi stringr survival sys tibble tidyr tidyselect timechange timeDate tinytex tzdb utf8 vctrs VineCopula viridisLite withr xfun yaml

Help page	Topics
ACTG181	ACTG181
the AIC of a CopulaCenR object	AIC.CopulaCenR
AREDS	AREDS
the BIC of a CopulaCenR object	BIC.CopulaCenR
the coefficient estimates of a CopulaCenR object	coef.CopulaCenR
Copula-based regression models for bivariate censored data	CopulaCenR
data_scmprisk	data_scmprisk
Simulate bivariate time-to-event times based on specific copula and marginal distributions	data_sim_copula
data_sim_ic	data_sim_ic
data_sim_multi_rec	data_sim_multi_rec
data_sim_RC	data_sim_RC
data_sim_rec	data_sim_rec
data_sim_scmprisk_vs	data_sim_scmprisk_vs
DRS	DRS
Fitted values from CopulaCenR regression models	fitted.CopulaCenR
Copula regression models with parametric margins for bivariate interval-censored data	ic_par_copula
Copula regression models with semi-parametric transformation margins for semi-competing risk data under interval-censoring and left-truncation	ic_scmprisk_spTran_copula
Copula regression models with semiparametric margins for bivariate interval-censored data	ic_spTran_copula
An information ratio-based goodness-of-fit test for copula models on censored data	IRsurv
Kidney	Kidney
Plotting for CopulaCenR fits	lines.CopulaCenR
the log-likelihood of a CopulaCenR object	logLik.CopulaCenR
Likelihood-ratio test for covariate effect(s) in copula models	lrt_copula
Plotting for CopulaCenR fits	plot.CopulaCenR
Predictions from CopulaCenR regression models	predict.CopulaCenR
Printing outputs of a CopulaCenR object	print.CopulaCenR
Print the summary of a CopulaCenR object	print.summary.CopulaCenR
Copula regression models with parametric margins for bivariate right-censored data	rc_par_copula
Penalized copula regression models with Cox semiparametric margins for semi-competing risk data under right-censoring.	rc_scmprisk_sp_copula_pen
Copula regression models with Cox semiparametric margins for bivariate right-censored data	rc_spCox_copula
Generalized score test for covariate effect(s)	score_copula
Summarizing outputs of a CopulaCenR object	summary.CopulaCenR
Calculate Kendall's tau	tau_copula

Package: CopulaCenR 1.2.3

CopulaCenR: Copula-Based Regression Models for Multivariate Censored Data

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